pfam
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Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
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Sep 18, 2024 - C++
A Julia package to analyze protein sequences, structures, and evolutionary information
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Oct 23, 2024 - Julia
Co-occurrence of enzyme domains
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Sep 16, 2020 - Jupyter Notebook
Scripts to calculate sequence similarity networks (SSNs) and clustering of protein sequences.
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May 14, 2021 - R
PFAM's micro service to assist to Mistic2.
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Feb 15, 2023 - Python
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
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Apr 14, 2022 - R
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
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Apr 17, 2019 - JavaScript
A deepchain-app to predict protein family 🔬
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May 12, 2021 - Jupyter Notebook
Set of tools for protein sequence enrichment and protein domain finding
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Jun 1, 2022 - Python
PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …
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Jan 1, 2023 - Python
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
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Jun 20, 2023 - Common Workflow Language
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Nov 8, 2018 - Python
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
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Nov 13, 2019 - Python
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
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May 3, 2017 - Jupyter Notebook
Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice
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Sep 14, 2024 - Python
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