peak-calling
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ChIP-seq peak-calling, QC and differential analysis pipeline.
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Mar 12, 2025 - Nextflow
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
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Mar 9, 2025 - Nextflow
The ChIP-Seq peak calling algorithm using convolution neural networks
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Jan 18, 2021 - Python
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
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Jan 30, 2025 - Perl
🥇 Maximum homogeneity clustering for one-dimensional data
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Apr 26, 2024 - R
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
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Apr 5, 2022 - Nextflow
Benchmarking ChIP-seq peak callers
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Dec 11, 2018 - Python
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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Mar 17, 2025 - Python
cell-free ChIP-seq pipeline
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Feb 7, 2024 - Python
ChIP-Seq processing pipeline on snakemake
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Mar 1, 2025 - Python
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
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May 14, 2024 - HTML
Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data
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May 12, 2019 - Python
SPP - R package for analysis of ChIP-seq and other functional sequencing data
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Jan 25, 2018 - C++
A Nextflow pipeline to perform peak calling of ChIP-seq, ATAC-seq or CUT&Tag sequencing data.
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Feb 25, 2025 - Nextflow
R package for mining, calling, and importing epigenomic peaks.
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Oct 2, 2024 - R
Peak classification with Deep Learning
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Jun 28, 2023 - Python
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
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Jun 14, 2023 - R
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
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Mar 13, 2023 - Shell
A small script to find peaks from the .bigWig file and output them in a .bed file.
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Feb 14, 2019 - Python
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