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#

peak-calling

Here are 20 public repositories matching this topic...

ChIP-seq peak-calling, QC and differential analysis pipeline.

  • UpdatedMar 12, 2025
  • Nextflow

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

  • UpdatedMar 9, 2025
  • Nextflow

Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

  • UpdatedJan 30, 2025
  • Perl

🥇 Maximum homogeneity clustering for one-dimensional data

  • UpdatedApr 26, 2024
  • R

CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.

  • UpdatedApr 5, 2022
  • Nextflow

Benchmarking ChIP-seq peak callers

  • UpdatedDec 11, 2018
  • Python

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

  • UpdatedMar 17, 2025
  • Python

ChIP-Seq processing pipeline on snakemake

  • UpdatedMar 1, 2025
  • Python

Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.

  • UpdatedMay 14, 2024
  • HTML

Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data

  • UpdatedMay 12, 2019
  • Python

SPP - R package for analysis of ChIP-seq and other functional sequencing data

  • UpdatedJan 25, 2018
  • C++

A Nextflow pipeline to perform peak calling of ChIP-seq, ATAC-seq or CUT&Tag sequencing data.

  • UpdatedFeb 25, 2025
  • Nextflow

R package for mining, calling, and importing epigenomic peaks.

  • UpdatedOct 2, 2024
  • R

Peak classification with Deep Learning

  • UpdatedJun 28, 2023
  • Python

Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.

  • UpdatedJun 14, 2023
  • R

Peak calling optimization via real time results assessment and interactive parameter adjustment.

  • UpdatedApr 29, 2022
  • R

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing

  • UpdatedMar 13, 2023
  • Shell

A small script to find peaks from the .bigWig file and output them in a .bed file.

  • UpdatedFeb 14, 2019
  • Python

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