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icsharpcode /ILSpy

.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!

c-sharp unity dotnet pdb dotnetcore decompiler mono decompile ilspy decompiler-engine

UpdatedJul 12, 2025
C#

inducer /pudb

Full-screen console debugger for Python

python debugger pdb ipython pytest debug pytest-plugin urwid bpython

UpdatedJun 18, 2025
Python

pdbpp /pdbpp

pdb++, a drop-in replacement for pdb (the Python debugger)

python syntax-highlighting debugger pdb completion

UpdatedApr 15, 2024
Python

crosire /blink

A tool which allows you to edit source code of any MSVC C++ project live at runtime

c-plus-plus pdb linker live-coding

UpdatedDec 18, 2023
C++

MolecularNodes

BradyAJohnston /MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

blender proteins structural-biology pdb protein-data-bank protein-structure visualisation molecule molecular-dynamics molecular-graphics protein biochemistry molecular blender-addon molecular-modeling sciart protein-visualization geometry-nodes

UpdatedJul 12, 2025
Python

plasma-umass /ChatDBG

ChatDBG - AI-assisted debugging. Uses AI to answer 'why'

python debugger pdb lldb c-programming debugging-tools cpp-programming gpt-3

UpdatedJul 8, 2025
Python

ajkhoury /ReClassEx

ReClassEx

pdb x64 symbols reclass rtti memory-analysis reclassex 2017 2015 2016 reclass64 reclassx64 reclass2015 reclass2016 reclass2017

UpdatedJul 5, 2021
C++

spiside /pdb-tutorial

A simple tutorial about effectively using pdb

python debugger tutorial pdb

UpdatedJun 6, 2024
Python

PDBRipper

horsicq /PDBRipper

PDBRipper is a utility for extract an information from PDB-files.

pdb reverse-engineering hacktoberfest pdb-files pdb-parser hacktoberfest2023

UpdatedJul 12, 2025
C

sakhnik /nvim-gdb

Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB

neovim pdb gdb lldb bashdb nvim-gdb

UpdatedJan 25, 2025
Lua

BioPandas /biopandas

Working with molecular structures in pandas DataFrames

bioinformatics pdb molecular-structures pandas-dataframe protein-structure molecule computational-biology drug-discovery molecules mol2 pdb-files

UpdatedAug 1, 2024
Python

mdtraj /mdtraj

An open library for the analysis of molecular dynamics trajectories

python pdb molecular-dynamics dihedral-angles mdtraj rmsd pdb-files molecular-dynamics-trajectories

UpdatedJul 8, 2025
Python

biojava /biojava

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

java bioinformatics genomics pdb parser-library protein-data-bank protein-structure protein-sequences sequence-alignment protein-modification structure-alignment structural-bioinformatics

UpdatedMar 20, 2025
Java

Mixaill /FakePDB

Tool for PDB generation from IDA Pro database

debugging cpp pdb llvm ida idapython

UpdatedOct 28, 2024
C++

plip

pharmai /plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021),https://doi.org/10.1093/nar/gkab294

docker bioinformatics pdb protein-structure singularity python-bindings scientific-computing openbabel plip

UpdatedJun 20, 2025
Python

charnley /rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

pdb structure molecule assignment alignment atoms reordering xyz rmsd kabsch

UpdatedJan 13, 2025
Python

getsentry /pdb

A parser for Microsoft PDB (Program Database) debugging information

debugging pdb rust-library microsoft-pdb tag-production

UpdatedJun 2, 2025
Rust

haddocking /pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

python bioinformatics structural-biology pdb protein structural-bioinformatics utrecht-university rcsb

UpdatedSep 3, 2024
Python

cansarigol /pdbr

pdb + Rich library

python debugger pdb ipython celery traceback rich debugger-color

UpdatedJul 7, 2025
Python

ergrelet /windiff

Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.

windows rust diff web pdb nextjs reverse-engineering preview syscalls win32 portable-executable undocumented ntoskrnl insider

UpdatedJul 12, 2025
Rust

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