pancreas

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche

10xgenomics pancreas scrna-seq-analysis

UpdatedOct 22, 2021
R

IvanKuchin /pancreas_segmentation

Star11

Tensorflow implementation of a 3D-CNN U-net with Grid Attention and DSV for pancreas segmentation trained on CT-82.

ai ml attention-mechanism dsv 3d-convolutional-network 3d-cnn attention-model pancreas u-net pancreatic-cancer 3d-convolutions deep-supervision pancreas-segmentation

UpdatedDec 31, 2024
Python

perceivelab /Transformer-IPMN

Star4

Official PyTorch implementation for paper: "Neural Transformers for Intraductal Papillary Mucosal Neoplasms (IPMN) Classification in MRI images"

deep-neural-networks deep-learning transformers medical-imaging interpretability pancreas classification-model vision-transformer ipmn

UpdatedSep 26, 2022
Python

perceivelab /panknet

Star4

The official PyTorch implementation for paper "Hierarchical 3D Feature Learning for Pancreas Segmentation"

deep-learning pytorch medical-imaging segmentation pancreas pancreas-segmentation mlmi2021

UpdatedSep 27, 2021
Python

mcanouil /insane

Sponsor

Star3

An Interactive Web Application for Quality Control and Analysis of Insulin Secretion from Pancreatic Beta Cells.

r statistics shiny stats rstats r-package pancreas beta-cells insulin-secretion endoc-betah1

UpdatedJan 1, 2025
R

ParkerLab /2021_islet-rfx6

Star2

Code for Walker, Saunders, Rai et al., (2021).

gwas rna-seq atac-seq single-cell integrative-analysis codex alpha-cell pancreas wgcna beta-cells islets multiome rfx6

UpdatedFeb 2, 2022
Roff

PBPath /JournalWatchPBPath

Star2

Journal Watch for PBPath.org

journal database article pubmed studies pathology pancreas biliary pbpath journal-watch bile-duct

UpdatedMar 26, 2021
HTML

Kafri-Lab /Cell-3D-Image-Analysis

Star2

Measure Cell Size in 3D

confocal-microscope zstack islet pancreas cellsize

UpdatedAug 16, 2017
MATLAB

ansohn88 /MIPCL

Star1

Code repository for paper: "A deep learning model to triage and predict adenocarcinoma on pancreas cytology whole slide imaging"

deeplearning pancreas cytology adenocarcinoma

UpdatedOct 3, 2023
Python

MarkusHoenig /Segmentation-Tool

Star1

Segmentation tool that segments 3D medical images using CNNs. Trained on CT-images of the pathological pancreas with Caffe.

python caffe cnn segmentation pancreas

UpdatedMar 7, 2019
Python

adavradou /Pancreas-detection-YOLOv4

Star1

The YOLOv4 is used for pancreas detection on CT-scans.

detection yolo pancreas ct-scans pancreas-detection

UpdatedMar 21, 2021
Jupyter Notebook

pathologyatlas /pancreaticadenocarcinoma

Star0

pathology pancreas histopathology histopathology-images medical-school

UpdatedJun 28, 2024
JavaScript

codiceviola /codiceviola

Star0

💜 Codice Viola is committed to improving the survival and quality of life of patients with pancreatic adenocarcinoma

pancreas adenoarcinoma pancreatic-cancer

UpdatedFeb 20, 2022
HTML

dannyconrad /PancreasOrganoidMULTIseq

Star0

R scripts used to analyze single-nucleus RNA-seq data generated from in vitro differentiated pancreatic organoids, described in Huang, L. et al. 2021 (in press).

biology transcriptomics single-cell single-cell-rna-seq pancreas seurat single-nuclei-rna-sequencing multi-seq