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milescsmith /ReductionWrappers

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

python wrapper bioinformatics dimensionality-reduction tsne forceatlas2 umap dimension-reduction force-directed-graphs wrappers seurat singlecellexperiment singlecellexperiment-objects paga phate opentsne pacmap dimensional-reduction

UpdatedDec 30, 2024
R

Smendowski /data-embedding-and-visualization

Star2

Visualization and embedding of large datasets using various Dimensionality Reduction (DR) techniques such as t-SNE, UMAP, PaCMAP & IVHD. Implementation of custom metrics to assess DR quality with complete explaination and workflow.

visualization metrics reduction pca t-sne mds autoencoders isomap dr trustworthiness dimensionality pacmap sheppard ivhd dimiensionality co-ranking drquality knngain

UpdatedJul 6, 2022
Jupyter Notebook

gustafssonlinnea /UMAP-vs-PaCMAP

Star2

This is a dimensionality reduction project in the course DD2470 Advanced Topics in Visualization and Computer Graphics at KTH Royal Institute of Technology, Stockholm (2024), made by Linnéa Gustafsson.

dimensionality-reduction umap multidimensional-data dimensionality-reduction-algorithms pacmap