pacbio
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Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
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Feb 1, 2025 - C++
Structural variation caller using third generation sequencing
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Mar 12, 2025 - Python
Fast and accurate de novo assembler for long reads
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May 10, 2024 - C
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
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Mar 18, 2024 - C++
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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Feb 28, 2025 - Python
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
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Feb 26, 2025
Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Mar 12, 2025 - Nextflow
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
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Apr 18, 2022
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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Mar 17, 2025 - Python
Technology agnostic long read analysis pipeline for transcriptomes
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Jan 25, 2024 - Python
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
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Mar 18, 2024
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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Feb 18, 2025 - Python
An accurate and ultra-fast hybrid genome assembler
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Apr 10, 2024 - Perl
ClairS - a deep-learning method for long-read somatic small variant calling
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Feb 27, 2025 - Python
Long-reads Gap-free Chromosome-scale Assembler
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Mar 21, 2023 - Python
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