release version

• UpdatedJul 29, 2022
• Python

Annotate DNA sequences for Gene Ontology terms

• UpdatedJul 2, 2022
• Perl

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

• UpdatedDec 5, 2024
• Python

A tool for accurately detecting actively translating ORFs from Ribo-seq data

• UpdatedJan 30, 2025
• Python

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

• UpdatedMar 13, 2025
• Python

DEPRECATED: Use Cenote-Taker 3 instead

• UpdatedJan 19, 2024
• Shell

A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

• UpdatedMar 25, 2022
• Jupyter Notebook

An assembly language operating system for the Raspberry Pi Zero to identify genes in a DNA sequence.

• UpdatedJun 17, 2019
• Assembly

AI-based Detection of Open Reading Frames (ORFs) in Geminiviruses

• UpdatedMay 25, 2023
• Python

A collection of various biopython scripts.

• UpdatedMar 3, 2023
• Python

Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.

• UpdatedFeb 29, 2024
• Jupyter Notebook

This code is not working perfectly as it prints out the incorrect frame numbers. However it is a good starting point for anyone doing a project. Feel free to fork or commit.

• UpdatedJan 29, 2020
• Python