OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

• UpdatedOct 3, 2023
• Jupyter Notebook

A toolkit for evaluating and monitoring AI models in clinical settings

• UpdatedMar 17, 2025
• Python

A web application to find patients, build cohorts and visualize health records

• UpdatedMar 21, 2025
• TypeScript

Unlocking the Power of Health Data With a Modern Data Lakehouse

• UpdatedJan 13, 2024
• Python

Streamlined Data Mapping to OMOP

• UpdatedMar 21, 2025
• Python

OMOP <-> FHIR mapper

• UpdatedMar 6, 2023
• Java

A software toolkit for the interconversion of standard data models for phenotypic data

• UpdatedMar 19, 2025
• Perl

An ETL pipeline to transform your EMP data to OMOP.

• UpdatedFeb 4, 2025
• Python

ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.

• UpdatedMar 13, 2025
• Java

A set of document templates facilitating efficient implementation and operation of an OMOP/OHDSI installation

• UpdatedMay 17, 2024

A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.

• UpdatedMar 21, 2025
• C#

R Package that supports standardization of clinical data to Athena (athena.ohdsi.org)

• UpdatedFeb 9, 2022
• R

• UpdatedMar 13, 2025

A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM

• UpdatedMar 21, 2025
• Java

R package for finding patients in SQL databases using formulas and without using SQL joins

• UpdatedMar 14, 2023
• R

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

• UpdatedJan 18, 2025
• Python

The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

• UpdatedFeb 15, 2025
• FreeMarker

Former repo for Hutch

• UpdatedJan 17, 2024
• C#

Create a simulation patient population using Synthea and ETL it into the OMOP Common Data Model

• UpdatedJul 15, 2021
• R

🦉 An OWL ontology for the OMOP Common Data Model

• UpdatedDec 8, 2023
• Python