Mapping the MIMIC-III database to the OMOP schema

• UpdatedMar 17, 2024
• PLpgSQL

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

• UpdatedOct 3, 2023
• Jupyter Notebook

A web application to find patients, build cohorts and visualize health records

• UpdatedMar 21, 2025
• TypeScript

eds-scikit is a Python library providing tools to process and analyse OMOP data

• UpdatedDec 19, 2024
• Python

OMOP standardization pipeline for ICU databases

• UpdatedFeb 24, 2025
• Python

Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

• UpdatedJul 14, 2021
• Python

The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)

• UpdatedApr 16, 2021
• R

Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

• UpdatedMay 9, 2023
• JavaScript

We jailbreak your medical records and genomics data. For free.

• UpdatedJan 9, 2023
• JavaScript

Streamlined Data Mapping to OMOP

• UpdatedMar 21, 2025
• Python

FHIR to OMOP using PySpark on AWS Glue

• UpdatedMay 8, 2021
• Python

omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

• UpdatedMar 7, 2025
• R

Runs CQL phenotype definitions against an OMOP repository

• UpdatedApr 14, 2023
• Java

Research with the National COVID Cohort Collaborative (N3C:https://ncats.nih.gov/n3c)

• UpdatedJan 17, 2025
• TeX

A software toolkit for the interconversion of standard data models for phenotypic data

• UpdatedMar 19, 2025
• Perl

PCORnet Ontology to OMOP - beta!

• UpdatedFeb 7, 2024
• TSQL

An ETL pipeline to transform your EMP data to OMOP.

• UpdatedFeb 4, 2025
• Python

ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.

• UpdatedMar 13, 2025
• Java

Patient 'omics data in OMOP format

• UpdatedJun 4, 2020
• HTML

A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.

• UpdatedMar 21, 2025
• C#