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#

ngs-pipeline

Here are 122 public repositories matching this topic...

A collection of awesome things regarding all omics.

  • UpdatedJan 23, 2024

Exome/Capture/RNASeq Pipeline Implementation using snakemake

  • UpdatedMar 26, 2018
  • Python
CSBB-Shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

  • UpdatedApr 5, 2023
  • R

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

  • UpdatedJun 29, 2023
  • Common Workflow Language

Reconstruction and analysis of viral and host genomes at multi-organ level

  • UpdatedSep 30, 2024
  • Shell

Pipelines for NGS data preprocessing by the Bock lab and friends

  • UpdatedAug 29, 2022
  • Python

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

  • UpdatedFeb 21, 2025
  • Nextflow

A simple fastp-MultiQC nextflow pipeline

  • UpdatedFeb 2, 2023
  • Nextflow

SARS-CoV-2 Genome Assembler

  • UpdatedApr 11, 2023
  • Shell

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

  • UpdatedMar 21, 2024
  • Python

A fast, easy way to present complex bioinformatics pipelines to biologists

  • UpdatedSep 28, 2018
  • Shell

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

  • UpdatedNov 8, 2018
  • Python

Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

  • UpdatedDec 23, 2019
  • Shell

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

  • UpdatedDec 19, 2022
  • Nextflow

scripts associated with yam genome assembly

  • UpdatedMay 8, 2020
  • Python

command line and desktop tool for microbial variant calling

  • UpdatedFeb 27, 2025
  • Jupyter Notebook

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

  • UpdatedMar 7, 2025
  • Nextflow

A flexible, automation and pragmatic workflow tool to process the NGS data.

  • UpdatedDec 13, 2023
  • R

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