ngs-pipeline
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A collection of awesome things regarding all omics.
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Jan 23, 2024
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
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Apr 5, 2023 - R
Project Manager for NGS data analysis
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Aug 24, 2022 - Python
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
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Jun 29, 2023 - Common Workflow Language
Reconstruction and analysis of viral and host genomes at multi-organ level
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Sep 30, 2024 - Shell
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Jan 11, 2019 - R
Pipelines for NGS data preprocessing by the Bock lab and friends
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Aug 29, 2022 - Python
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
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Feb 21, 2025 - Nextflow
A simple fastp-MultiQC nextflow pipeline
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Feb 2, 2023 - Nextflow
SARS-CoV-2 Genome Assembler
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Apr 11, 2023 - Shell
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
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Mar 21, 2024 - Python
A fast, easy way to present complex bioinformatics pipelines to biologists
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Sep 28, 2018 - Shell
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
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Nov 8, 2018 - Python
Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
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Dec 23, 2019 - Shell
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
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Dec 19, 2022 - Nextflow
scripts associated with yam genome assembly
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May 8, 2020 - Python
command line and desktop tool for microbial variant calling
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Feb 27, 2025 - Jupyter Notebook
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
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Mar 7, 2025 - Nextflow
A flexible, automation and pragmatic workflow tool to process the NGS data.
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Dec 13, 2023 - R
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