nextflow
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A DSL for data-driven computational pipelines
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Nov 5, 2025 - Groovy
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Nov 5, 2025 - Nextflow
A flexible pipeline for complete analysis of bacterial genomes
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Nov 4, 2025 - Nextflow
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
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Oct 30, 2025 - Nextflow
GCP for Bioinformatics Researchers
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May 29, 2025 - Jupyter Notebook
Assembly and binning of metagenomes
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Nov 6, 2025 - Nextflow
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
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Nov 5, 2025 - JavaScript
ChIP-seq peak-calling, QC and differential analysis pipeline.
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Oct 16, 2025 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Nov 3, 2025 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Oct 27, 2025 - Nextflow
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