circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

• UpdatedMar 11, 2025
• Nextflow

Using RNA-Seq data to improve microRNA target prediction accuracy in animals

• UpdatedMar 9, 2025
• Python

A command line version of the psRNATarget workflow that predicts potential miRNA target locations on a genome.

• UpdatedFeb 13, 2023
• Python

miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information

• UpdatedNov 1, 2024
• HTML

Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data

• UpdatedOct 5, 2024
• HTML

Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

• UpdatedOct 22, 2022
• Shell

Web application for accessing data generated by FilTar

• UpdatedSep 20, 2019
• JavaScript

My Final Year Project - miRNA Target Prediction by adapting it to Next Sentance Prediction and assessing the performance of SOTA NLP architectures on the problem.

• UpdatedNov 25, 2020
• Jupyter Notebook

multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction

• UpdatedAug 22, 2024
• R

Database of pairwise consensuses for miR-mRNA target interactions

• UpdatedNov 3, 2017
• R

Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach

• UpdatedFeb 8, 2024

R package for retrieving miRNA data from the web

• UpdatedJul 15, 2020
• R