miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

• UpdatedApr 27, 2022
• Perl

Bioinformatics Pipeline

• UpdatedOct 7, 2022
• R

myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry

• UpdatedFeb 14, 2025
• R

[Tools] miRanda: An miRNA target scanner that aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics

• UpdatedDec 30, 2022
• C

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

• UpdatedJul 13, 2023
• Python

miRSim Synthetic Sequence Simulator

• UpdatedMay 10, 2023
• Jupyter Notebook

scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results

• UpdatedJun 9, 2023
• Shell

Scripts of Final Master Project

• UpdatedSep 7, 2023
• R

An awesome microRNA-sequencing pipeline

• UpdatedMar 17, 2025
• Python

multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction

• UpdatedAug 22, 2024
• R

Involvement of Extracellular Vesicle-derived miRNA clusters in Developing Healthy and Rett Syndrome Brain Organoids

• UpdatedFeb 6, 2025
• R

R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.

• UpdatedJun 8, 2022
• R

All the R scripts I used during my time as a grad student at Clemson University

• UpdatedNov 8, 2023
• R

An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.

• UpdatedMar 14, 2025
• R

Workflow Template

• UpdatedApr 4, 2024
• TeX

This is a complete Nextflow pipeline to analyse, process and align deep sequencing miRNA reads.

• UpdatedFeb 14, 2025
• Nextflow