MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

• UpdatedJan 21, 2025
• R

Python package for processing and analyzing Illumina DNA methylation data

• UpdatedOct 3, 2025
• Python

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

• UpdatedMay 27, 2021
• Python

Collection of gene expression datasets

• UpdatedOct 1, 2023

NormalizeQuantiles.jl implements quantile normalization

• UpdatedFeb 11, 2024
• Julia

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

• UpdatedOct 2, 2025
• Python

"Identification of Biomarkers for Early-Stage Hepatocellular Carcinoma (HCC)" aims to address the critical global challenge of late-stage cancer diagnosis, which significantly lowers patient survival rates. It explores microarray gene expression datasets from GEO to identify potential early-stage biomarkers for improved patient outcomes.

• UpdatedOct 3, 2024
• Jupyter Notebook

Acute Myeloid Leukemia Microarray Analysis

• UpdatedFeb 8, 2021
• Jupyter Notebook

Source code and description of GCSscore Package

• UpdatedAug 4, 2023
• R

Tumor Identification Based on Machine Learning Analysis of Microarray Data

• UpdatedFeb 1, 2025
• Jupyter Notebook

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

• UpdatedJan 7, 2023
• R

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

• UpdatedJul 28, 2020
• Python

Analysis of long continuous stretches of homozygosity of the human genome.

• UpdatedMar 19, 2023
• Jupyter Notebook

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

• UpdatedJan 18, 2024

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

• UpdatedJun 7, 2022
• Python

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

• UpdatedJan 13, 2023
• R

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

• UpdatedNov 18, 2019
• R

Nextcast: a software suite to analyse and model toxicogenomics data

• UpdatedOct 31, 2024
• R

Project for the course of Network Based Data Analysis 💻

• UpdatedSep 5, 2024

A repository of RNA-seq & microarray pipelines, network modeling, and ML-based biomarker validation projects from my 2nd–3rd year undergrad.

• UpdatedOct 8, 2025
• HTML