Bioconductor cheat sheet

• UpdatedAug 26, 2024
• HTML

Python library to access Gene Expression Omnibus Database (GEO)

• UpdatedJul 27, 2024
• Jupyter Notebook

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

• UpdatedOct 27, 2025
• Nextflow

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

• UpdatedJan 4, 2025
• R

R package for normalizing RNA-seq data to make them comparable to microarray data.

• UpdatedMay 4, 2023
• R

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

• UpdatedMar 20, 2023
• HTML

Easy Copy Number !

• UpdatedAug 27, 2025
• R

Microarray Analysis Pipeline in Python

• UpdatedAug 1, 2019
• Jupyter Notebook

Cross-platform GUI desktop application for making biological heatmaps

• UpdatedNov 10, 2022
• C

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

• UpdatedAug 19, 2025
• R

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

• UpdatedAug 1, 2021
• Python

UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images

• UpdatedOct 4, 2019
• Python

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

• UpdatedMay 27, 2021
• Python

Collection of gene expression datasets

• UpdatedOct 1, 2023

Genomic data manipulation tool

• UpdatedOct 6, 2024
• Python

SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data

• UpdatedSep 27, 2023
• Jupyter Notebook

Latex scripts to compile my PhD thesis

• UpdatedMar 11, 2025
• TeX

bimodal DNN for NSCLC patient overall survival prediction

• UpdatedMay 20, 2020

R package for visualization of omics data

• UpdatedOct 11, 2024
• R

Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator

• UpdatedSep 27, 2024
• R