micro-manager

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

plugin imagej scripting microscopy imaging histology microscope micro-manager whole-slide-imaging microscope-stage-controller image-stacks image-acquisition imagej-macro microscope-control

UpdatedJan 9, 2025
C#

pymmcore-plus /pymmcore-widgets

Star15

A set of Qt-based widgets onto the pymmcore-plus model

python gui microscopy micro-manager

UpdatedMar 5, 2025
Python

SRMLabHUST /QC-STORM

Star9

Online processing plugin (Micro-Manager & ImageJ) for quality-controlled super-resolution localization imaging.

imagej micro-manager localization-microscopy localization-density localization-precision mle-localization

UpdatedSep 16, 2020
C++

hadim /mm_scripts

Sponsor

Star3

A collection of scripts related to Micro-Manager.

java imagej imagej2 fiji microscope micro-manager

UpdatedMar 2, 2019
Shell

bryantChhun /mm2Python

Star2

micro-manager 2.0 plugin that enables python control using Py4j remote procedure calls and IPC data transfer using memory mapped files

python micro-manager py4j ipc-data-transfer chan-zuckerberg-biohub

UpdatedFeb 7, 2020
Java

mariavmukhina /ScopeScript

Star2

Matlab microscope control software integrated with custom TTL controller for acquisition of 4D datasets with up to sub-millisecond temporal resolution

micro-manager microscope-stage-controller microscope-control nikon-ti2 device-adapter micro-manipulation

UpdatedAug 1, 2024
MATLAB

BiologyTools /Micro-Manager.NET

Sponsor

Star1

Controlling Micro-Manager 2.0.3 with IKVM & C#

micro-manager

UpdatedOct 6, 2024

QBioLab /MatlabCallMM

Star1

Configure and example: Use Matlab call Micro-Manager to control microscope

matlab microscopy micro-manager

UpdatedJul 10, 2024
Jupyter Notebook

pymmcore-plus /pymmcore-midi

Star1

MIDI Device control for microscopes using pymmcore

midi micro-manager pymmcore pymmcore-plus

UpdatedMar 3, 2025
Python

MStefko /ImageInjectorPlugin

Star1

MicroManager 2.0 plugin for injecting external images into the processing pipeline, bypassing the need to acquire images in real time by a camera.

plugin java image-processing micro-manager

UpdatedJul 6, 2017
Java

donin1129 /MMSamplePlugIn

Star0

An example how to write plugin for Micro-Manager (μ-Manager) 2.0 using Gradle Kotlin build system. This repository can be used directly with and IntelliJ.

gradle intellij plugins micro-manager