marker-genes
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Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
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May 8, 2023 - R
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
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Mar 17, 2025 - R
marker-based purification of cell types from single-cell RNA-seq datasets
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Feb 3, 2025 - R
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
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Mar 17, 2025 - HTML
Accurate and fast cell marker gene identification with COSG
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Dec 24, 2022 - R
Marker gene profile estimation method used in NeuroExpresso manuscript
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Jul 11, 2019 - R
Processing NEON soil microbe marker gene sequence data into ASV tables.
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Apr 9, 2024 - R
A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.
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Feb 17, 2024 - Python
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
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Jan 23, 2023 - CSS
Interactive visualization of marker genes and clustering in Slide-seq and single cell RNAseq data.
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May 11, 2020 - Jupyter Notebook
Compare several feature selection methods in scRNA-seq analysis
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Feb 12, 2023 - Python
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
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Aug 8, 2024 - Python
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May 30, 2024 - R
The goal of LRcell is to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. To achieve this, LRcell utilizes sets of cell marker genes acquired from single-cell RNA-sequencing (scRNA-seq) as indicators for various cell types in the tissue of interest. Next, for each cell t…
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Sep 11, 2022 - R
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
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Jun 7, 2024 - HTML
A hybrid approach to find spatially relevant marker genes in image based spatial transcriptomics data
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Mar 2, 2025 - R
scCTS: identifying the cell type-specific marker genes from population-level single-cell RNA-seq
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Oct 18, 2024 - R
Permutation testing in single cell analysis
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May 17, 2022 - R
MICTI- Marker gene Identification for Cell Type Identity
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Sep 30, 2019 - Jupyter Notebook
neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated fromhttps://github.com/claraqin/neonMicrobe
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Jan 15, 2023 - HTML
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