Same species annotation lift over pipeline.

• UpdatedJul 21, 2023
• Ruby

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

• UpdatedFeb 26, 2025
• Python

liftover for python, made fast with cython

• UpdatedDec 3, 2024
• C++

A fast and efficient tool for converting chromatin interaction data between genome assemblies

• UpdatedJun 14, 2023
• Python

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

• UpdatedJul 19, 2021
• JavaScript

A Nextflow workflow to generate lift over files for any pair of genomes

• UpdatedFeb 12, 2025
• Nextflow

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

• UpdatedMar 2, 2023
• C++

Lifterover copy number segments in whole

• UpdatedFeb 6, 2024
• Python

An efficient genetic data imputation pipeline

• UpdatedApr 7, 2022
• R

A crate for working with genomics chain files.

• UpdatedJan 4, 2025
• Rust

Variant translation library for Clojure

• UpdatedMar 4, 2025
• Clojure

Go Language implementation of LiftOver

• UpdatedMay 9, 2019
• Go

a python pipeline to generate chain files between different genome assemblies for LiftOver.

• UpdatedJun 30, 2020
• Python

Perform liftover on plink files

• UpdatedFeb 19, 2025
• Python

Repository for miscellaneous bioinformatics scripts that may be useful to others.

• UpdatedFeb 7, 2017
• Python

Scripts for making chain file for mm10 - ms10 liftover

• UpdatedFeb 2, 2018
• Python

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

• UpdatedJan 27, 2022
• Python

Fast liftover

• UpdatedFeb 24, 2021
• D

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

• UpdatedNov 25, 2024
• Makefile

A Go-written server for 23andMe-formatted raw data liftover

• UpdatedMar 7, 2023
• Python