leiden-algorithm

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CWTSLeiden /networkanalysis

Star150

Java package that provides data structures and algorithms for network analysis.

java mapping clustering layout community-detection network-analysis clustering-algorithm layout-algorithm louvain-algorithm leiden-algorithm vos-technique

UpdatedDec 19, 2023
Java

epigen /unsupervised_analysis

Star61

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

visualization workflow data-science snakemake clustering heatmap data-visualization high-dimensional-data pca dimensionality-reduction unsupervised-learning cluster-analysis principal-component-analysis clustering-algorithm umap cluster-validation leiden-algorithm densmap clustree

UpdatedSep 12, 2025
Python

KangboLu /Graph-Analysis-with-NetworkX

Star54

🎇 Network/Graph Analysis with NetworkX in Python. Topics range from network types, statistics, link prediction measures, and community detection.

python tutorial graph-algorithms numpy community-detection pandas networkx graph-theory matplotlib network-analysis igraph graph-analysis louvain-algorithm leiden-algorithm

UpdatedDec 5, 2021
Jupyter Notebook

barahona-research-group /PyGenStability

Star45

PyGenStability: Multiscale community detection with generalized Markov Stability

clustering community-detection python3 multiscale louvain-algorithm leiden-algorithm

UpdatedNov 17, 2025
C++

neesjanvaneck /networkanalysis-ts

Star14

TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.

typescript mapping clustering layout community-detection network-analysis clustering-algorithm layout-algorithm louvain-algorithm leiden-algorithm vos-technique

UpdatedOct 18, 2022
TypeScript

CWTSLeiden /publicationclassification

Star11

Java package for creating a multi-level classification of scientific publications based on citation links between publications.

java clustering community-detection scientific-publications clustering-algorithm leiden-algorithm multi-level-classification publication-classification citation-links

UpdatedJan 22, 2024
Java

yottoo /JuliaCommunity

Star10

A julia wrapper for Leiden algorithm to discover and plot the communities of a network.

community-detection network-visualization network-analysis julialang leidenalg leiden-algorithm

UpdatedJun 10, 2021
Julia

xvi-xv-xii-ix-xxii-ix-xiv /xgraph

Star7

A comprehensive Rust library providing efficient graph algorithms for solving real-world problems in social network analysis, transportation optimization, recommendation systems, and more

rust graph graph-algorithms community-detection directed-graph graph-processing graph-theory dijkstra graph-analysis heterogeneous adjacency-matrix multigraph weighted-graph leiden-algorithm bridge-detection

UpdatedMar 13, 2025
Rust

gurbaaz27 /cs690a-clustering-spatial-transcriptomics-data

Star4

Course Assignment on Clustering of Spatial Transcriptomics Data

rna-seq deep-learning clustering computational-biology gene-expression cancer-genomics transcriptomics variational-inference variational-autoencoder k-means-clustering variational-autoencoders louvain-algorithm spatial-transcriptomics computational-genomics visium leiden-algorithm

UpdatedNov 1, 2022
Jupyter Notebook

MiqG /leiden_clustering

Star4

Cluster your data matrix with the Leiden algorithm.

data-mining clustering leiden-algorithm

UpdatedAug 6, 2021
Python

msmrexe /graphrag-query-summarization

Star1

An implementation of the GraphRAG pipeline (based on the 2024 paper "From Local to Global" by Edge et al.) for query-focused summarization of large text corpora.

university-project course-project knowledge-graph-construction rag hierarchial-language-model document-ingestion qfs query-focused-summarization leiden-algorithm system-2 retrieval-augmented-generation graphrag global-query llm-graph

UpdatedNov 5, 2025
Python

owaisahmadlone /INNOV8-2.0-EightFoldAI

Star1

Our Submission in Finals of the INNOV8-2.0 Competition held by Eightfold.AI at IIT Delhi. The repository explores an AI based resume and recommendations screener called SATYA which employs various techniques to score resumes with a fraud score (implying the degree of fraud in a resume)

nlp graph-algorithms chatbot knowledge-graph chatbot-application rag leiden-algorithm llm

UpdatedNov 13, 2024
Jupyter Notebook

UVA-LavaLab /GraphBrew

Star1

Brewing GAPBS with vertex reordering and graph segmentation

caching graph clustering triangle pagerank counting tc bfs reordering dbg connected-components sssp leiden-algorithm corder rabbitorder gapbs gorder p-opt

UpdatedJul 22, 2024
C++

GiatrasKon /Gastric-Cancer-scRNAseq-Analysis

Star1

Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.