infectious-disease-models

A set of "real-time" covid19 county-level dashboards w/ national and state choropleths for monitoring localized infection resurgences as distancing, testing and tracing measures evolve.

real-time dashboard jupyter jupyter-notebook bayesian-methods rt bokeh differential-equations choropleth r0 seir infectious-disease-models health-policy coronavirus-real-time covid-19 covid19 sars-cov-2 covid19-data county-level effective-reproductive-number

UpdatedApr 12, 2023
Python

HopkinsIDD /flepiMoP

Star9

The Flexible Epidemic Modeling Pipeline

influenza dynamical-modeling compartmental-models infectious-disease-models covid-19

UpdatedMar 25, 2025
HTML

anjanatiha /Novel-Corona-Virus-Pandemic-Analysis-and-Modeling

Star8

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

data-science data-visualization public-health corona data-analysis disease-surveillance disease-spread infectious-diseases disease-prediction public-health-care disease-modeling infectious-disease infectious-disease-models coronavirus coronavirus-globaloutbreak coronavirus-tracking coronavirus-real-time coronavirus-info coronavirus-analysis

UpdatedSep 8, 2020
Jupyter Notebook

jandraor /SDR_Bayes

Star8

System Dynamics Review (2021)

r stan model-calibration system-dynamics hamiltonian-monte-carlo infectious-disease-models

UpdatedSep 23, 2021
R

toniesteves /covid19-chest-x-ray-detection

Star6

Detecção de COVID-19 a partir de imagens de raios X de tórax utilizando uma Deep Convolutional Neural Network otimizada.

data-science computer-vision deep-learning data-visualization public-health disease-surveillance disease-spread infectious-diseases disease-prediction public-health-care disease-modeling infectious-disease analysis-data infectious-disease-models coronavirus coronavirus-globaloutbreak coronavirus-tracking coronavirus-info coronavirus-analysis covid-19

UpdatedMar 31, 2020
Jupyter Notebook

waleedalmutiry /EpiILMCT

Star6

Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics

package cran r plots network distance bayesian-inference epidemics infectious-disease-models epidemic-data kerneltype

UpdatedJan 21, 2020
Fortran

fannybergstrom /nowcasting_covid19

Star6

Bayesian Nowcasting with application to COVID-19 fatalities in Sweden

bayesian-statistics nowcasting infectious-disease-models covid-19 surviellance

UpdatedMar 9, 2023
R

fudab /fudab.github.io

Star5

Official website @ Github with content including COVID-19.

infectious-diseases sir-model infectious-disease-models covid-19

UpdatedMar 22, 2021
HTML

Taarak9 /Time-dependent-SEIRD-Model

Star5

A Time-Dependent SEIRD Model for Forecasting the COVID-19 Transmission Dynamics

parameter-estimation infectious-disease-models covid-19 seird-model

UpdatedJun 21, 2021
Python

IQTLabs /Viziflu

Star5

An open-source visualization tool to help make multi-model seasonal influenza forecasts more actionable for decision-makers

visualization dataviz public-health forecasting epidemiology flusightnetwork infectious-disease-models influenza-forecasts flu-season

UpdatedJan 6, 2022
JavaScript

IqbalLx /Coronavirus-in-Indonesia-Analysis

Star5

In this repository we aim to predict the peak of coronavirus cases in Indonesia, and when this pandemic will end. The data is retrieved fromhttps://www.kawalcovid19.id/

scientific-computing infectious-disease-models coronavirus-analysis