immunology
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MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
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Mar 13, 2025 - Kotlin
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
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Apr 9, 2024 - R
📚 Tools and databases for analyzing HLA and VDJ genes.
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Dec 10, 2024
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
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Jan 15, 2025 - Python
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
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Mar 11, 2025 - Groovy
[REPLACED byhttps://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
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May 23, 2024 - Groovy
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
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Feb 15, 2023 - Jupyter Notebook
A collaborative review of the emerging COVID-19 literature. Join the chat here:
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Feb 2, 2024 - TeX
Precision HLA typing from next-generation sequencing data
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Feb 6, 2025 - Nextflow
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
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Oct 29, 2024 - Groovy
Python package and command line tool for epitope prediction
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Aug 2, 2024 - Jupyter Notebook
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
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Mar 14, 2025 - Python
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
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Apr 29, 2022 - C
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
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Feb 26, 2021 - R
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Jul 7, 2022 - R
A Python library for reading and writing Flow Cytometry Standard (FCS) files
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Mar 15, 2025 - Python
A RepSeq processing swiss-knife
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Mar 29, 2024 - Groovy
simpler single cell RNAseq data clustering
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Feb 28, 2025 - R
A data-centric flow/mass cytometry automated analysis framework
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Jan 22, 2025 - Python
[DEPRECATED, seehttps://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
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Jun 8, 2020 - R
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