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#

immunology

Here are 160 public repositories matching this topic...

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

  • UpdatedMar 13, 2025
  • Kotlin
awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

  • UpdatedDec 10, 2024

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

  • UpdatedJan 15, 2025
  • Python

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

  • UpdatedMar 11, 2025
  • Groovy

[REPLACED byhttps://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data

  • UpdatedMay 23, 2024
  • Groovy

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

  • UpdatedFeb 15, 2023
  • Jupyter Notebook

A collaborative review of the emerging COVID-19 literature. Join the chat here:

  • UpdatedFeb 2, 2024
  • TeX

Precision HLA typing from next-generation sequencing data

  • UpdatedFeb 6, 2025
  • Nextflow

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

  • UpdatedOct 29, 2024
  • Groovy

Python package and command line tool for epitope prediction

  • UpdatedAug 2, 2024
  • Jupyter Notebook
stitchr

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

  • UpdatedMar 14, 2025
  • Python

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:

  • UpdatedApr 29, 2022
  • C

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

  • UpdatedFeb 26, 2021
  • R

A Python library for reading and writing Flow Cytometry Standard (FCS) files

  • UpdatedMar 15, 2025
  • Python

A RepSeq processing swiss-knife

  • UpdatedMar 29, 2024
  • Groovy

simpler single cell RNAseq data clustering

  • UpdatedFeb 28, 2025
  • R

[DEPRECATED, seehttps://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

  • UpdatedJun 8, 2020
  • R

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