KNIME Image Processing Extension

• UpdatedNov 29, 2024
• Java

The ImageJ framework for quantification of neuronal anatomy

• UpdatedMar 14, 2025
• Java

Matlab function to import ROIs from ImageJ

• UpdatedDec 13, 2019
• MATLAB

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

• UpdatedJun 3, 2022
• Java

The Cx3D modeling framework in SciView and SNT

• UpdatedApr 3, 2024
• Java

Cell segmentation of multi-channel images

• UpdatedMay 8, 2023
• ImageJ Macro

A collection of scripts related to Micro-Manager.

• UpdatedMar 2, 2019
• Shell

Mageek is an ImageJ Java plugin to batch process microscope images

• UpdatedMar 16, 2022
• Java

IHC scoring of multi-channel images

• UpdatedApr 26, 2023
• ImageJ Macro

• UpdatedMar 7, 2022
• Java

ImageJ plugin for handling NDPI files.

• UpdatedApr 14, 2023
• Java

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

• UpdatedNov 19, 2024
• Python

Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji

• UpdatedJun 18, 2021
• ImageJ Macro

ImageJ plugin containing a collection image segmentation algorithms.

• UpdatedMay 3, 2021
• Java

ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis

• UpdatedJan 4, 2024
• Java

Write SciJava scripts in Jupyter notebook!

• UpdatedAug 21, 2018
• Java

☕ 🐍 🔬 🔖 📑 A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.

• UpdatedMay 20, 2021
• Python

ImageJ2 macro library with variables and functions

• UpdatedApr 28, 2023

A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.

• UpdatedApr 26, 2024
• Scala

🐍☕📑 Jython package for using SciJava's LogService for logging.

• UpdatedNov 14, 2024
• Python