haplotypecaller
Here are 6 public repositories matching this topic...
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
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Nov 27, 2024 - C++
The Pharmacogenomic Clinical Annotation Tool
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Mar 18, 2025 - Java
Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
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Mar 19, 2025 - C++
A BioWDL workflow for generating gVCF files from BAM files.
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Apr 1, 2020 - WDL
Nextflow pipeline for GATK best practices (HaplotypeCaller)
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Jul 16, 2019 - Nextflow
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
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Nov 26, 2024 - R
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