A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

• UpdatedMay 9, 2025
• JavaScript

GWAS summary statistics files QC tool

• UpdatedDec 24, 2024
• Python

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

• UpdatedJun 19, 2025
• R

TWAS-pipeline

• UpdatedFeb 21, 2021
• Shell

BWMR (Bayesian Weighted Mendelian Randomization)

• UpdatedJun 14, 2023
• R

Older repo for MRLocus. See new website for software usage guide:

• UpdatedAug 17, 2023
• R

Software to infer latent pleiotropic components from GWAS summary data

• UpdatedJan 30, 2025
• Python

Code and simulations using interaction-LD score regression

• UpdatedJul 2, 2024
• Python

Tool for integrative gene-based association analysis using GWAS summary stats

• UpdatedAug 28, 2019
• C++

Format of GWAS summary statistics.

• UpdatedJul 31, 2024
• Shell

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

• UpdatedAug 5, 2022
• Jupyter Notebook

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

• UpdatedDec 23, 2024
• JavaScript

Make interactive LocusZoom plots from a local GWAS file

• UpdatedMay 9, 2025
• Vue

MultiVariate Polygenic Mixture Model

• UpdatedApr 4, 2020
• R

Script for designing a manhattan plot.

• UpdatedOct 9, 2021
• Python

Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.

• UpdatedJan 14, 2021
• Python

Code for annotating GWAS with rsIDs and performing genome build liftover

• UpdatedJun 23, 2025
• R

Polygenic risk modeling with latent trait-related genetic components

• UpdatedFeb 23, 2021
• Jupyter Notebook

Mendelian Randomization approach using Cross Ancestral Model

• UpdatedApr 4, 2024
• R

• UpdatedJan 23, 2025
• Python