#
greengenes
Here are 5 public repositories matching this topic...
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
pythontaxonomiestreebioinformaticstaxonomyncbiottsilvagreengenesgtdbpyhton-libraryopen-tree-taxonomybiological-taxonomies
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Sep 6, 2024 - Python
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Nov 21, 2017 - Shell
Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.
bioinformaticstaxonomymetagenomicslineagetaxonomy-assignmentsilvataxonomic-classificationtaxontaxagreengenes
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Mar 16, 2021 - Python
Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.
unitehigh-throughput-sequencing16ssoil-samplerrnataxonomy-assignmentitsmicrobiome-analysismafftdada2marker-gene-analysisgreengenesqiime2microbiome-workflowfasttreemicrobiome-analysis-pipelinessoil-microbiomerhizospheres
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Feb 4, 2025 - Shell
Next Generation Phylogenetic Microbiome Analysis Framework
bioinformaticstaxonomyphylogenetic-treesphylogeneticsmicrobiomeotttaxonomy-assignmentsilvamicrobiome-analysistaxonomic-classificationotu-tablegreengenes16s-rrna
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Apr 23, 2022 - Python
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