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#

gff3

Here are 43 public repositories matching this topic...

pyGenomeViz

Python programs for processing GFF3 files

  • UpdatedMar 27, 2024
  • Python

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

  • UpdatedMar 14, 2024
  • Python

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

  • UpdatedJun 27, 2020
  • Perl

Tools for querying and analysis of genomic data

  • UpdatedNov 26, 2024
  • Perl

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

  • UpdatedFeb 13, 2025
  • Rust

A web application for interactive visualization and exploratory data analysis of variant call matrices

  • UpdatedJul 17, 2023
  • Svelte

Home of the Genomic Feature and Variation Ontology (GFVO)

  • UpdatedMar 13, 2021
  • Ruby

Convert sequence IDs between ucsc/refseq/genbank

  • UpdatedAug 28, 2018
  • Python

A Python package for Biopython that gives feature annotations from GenBank records a new and better life

  • UpdatedApr 27, 2016
  • Python

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

  • UpdatedJan 20, 2025
  • Python

cool BED-to-GFF3 converter that runs in parallel

  • UpdatedApr 13, 2024
  • Rust

Genome annotation data analysis and management implemented in pure Python

  • UpdatedOct 21, 2020
  • Python

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

  • UpdatedMay 7, 2023
  • Python

Plot gene structure

  • UpdatedAug 25, 2021
  • R

The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.

  • UpdatedJan 3, 2022

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