Another Gtf/Gff Analysis Toolkithttps://nbisweden.github.io/AGAT/

• UpdatedMar 16, 2025
• Perl

A genome visualization python package for comparative genomics

• UpdatedJan 11, 2025
• Python

Same species annotation lift over pipeline.

• UpdatedJul 21, 2023
• Ruby

Python programs for processing GFF3 files

• UpdatedMar 27, 2024
• Python

A DNA Sequence Alignment/Map (SAM) library for Clojure

• UpdatedMar 12, 2025
• Clojure

convert various features into a GFF-like file for use in genome browsers

• UpdatedFeb 26, 2025
• Python

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

• UpdatedSep 29, 2022
• Nim

Frequently used commands in bioinformatics

• UpdatedOct 12, 2024
• Python

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

• UpdatedMar 2, 2023
• C++

Efficiently keep track of changes to genomes

• UpdatedJul 22, 2024
• Python

scripts for RNA-Seq analysis

• UpdatedFeb 20, 2022
• Python

fastest GTF/GFF-to-BED converter chilling around

• UpdatedJan 18, 2025
• Rust

command lines tool to annotate miRNAs with a standard mirna/isomir naming

• UpdatedNov 8, 2024
• Python

Convert sequence IDs between ucsc/refseq/genbank

• UpdatedAug 28, 2018
• Python

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

• UpdatedMar 13, 2025
• Python

Convert genome annotation GTF file into plain CSV format

• UpdatedOct 3, 2018
• Jupyter Notebook

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

• UpdatedOct 18, 2021
• Python

RNAseq pipeline for alternative splicing junctions

• UpdatedJul 29, 2024
• R

Evolutionary Bioinformatics Toolkit (EBT)

• UpdatedJul 14, 2020
• Perl

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

• UpdatedNov 21, 2017
• Python