gene-set-enrichment-analysis
Here are 9 public repositories matching this topic...
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
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Jun 20, 2019
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
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Apr 14, 2023 - Jupyter Notebook
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
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Oct 18, 2023 - HTML
Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
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Mar 20, 2023 - R
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
Gene set enrichment analysis from scRNA seq data : in search of the original tissue
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Apr 19, 2022 - R
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
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Feb 26, 2024 - R
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
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Aug 6, 2024 - TeX
Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data
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Apr 19, 2022 - R
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