gene-network
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A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
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Aug 14, 2024 - R
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
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Nov 18, 2024 - Julia
Scalable Tool for Gene Network Reverse Engineering
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May 28, 2024 - C++
Finite State Projection algorithms for chemical reaction networks
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Oct 17, 2024 - Julia
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
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Apr 1, 2024 - Julia
Text mining tool to retrieve protein-protein interactions from the scientific literature.
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Jun 9, 2019 - Python
A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.
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Sep 26, 2023 - R
Genome Network Ala Neural Network
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May 5, 2021 - Python
Network-guided matrix completion
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Dec 8, 2015 - Python
Intuitive Nonparametric Gene Network Search Algorithm
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Jan 20, 2022 - Python
Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators
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Feb 5, 2025 - R
Can Cells Talk?
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Apr 17, 2024 - Jupyter Notebook
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
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May 13, 2024 - Cuda
This repo offers a workflow dedicated to utilizing BERTopic for Semantic Graph-based information retrieval in nutrigenomics. It includes Jupyter notebooks on topic modeling and semantic graph creation, aimed at enhance genetic literature exploration. Ideal for genomic researchers, it simplifies the analysis of nutrition-related genetic information.
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May 23, 2024 - Jupyter Notebook
Gold standard gene regulatory network data from the DREAM5 challenge.
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Jun 19, 2022
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia
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Jul 11, 2024 - Julia
Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R
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Mar 20, 2017 - R
Retinitis Pigmentosa gene interaction network website.
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Dec 20, 2019 - JavaScript
Network-based analysis of omics with multi-objective optimization
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Nov 15, 2021 - R
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
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Jun 8, 2022 - R
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