Movatterモバイル変換


[0]ホーム

URL:


Skip to content

Navigation Menu

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

Sign up
#

gatk4-haplotypecaller

Here are 4 public repositories matching this topic...

Language:All
Filter by language

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

  • UpdatedJan 17, 2024
  • Shell

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

  • UpdatedMay 1, 2024
  • Python

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

  • UpdatedNov 26, 2024
  • R

Optimized Python and C++ implementations of INDELseek, a Perl tool for detecting complex genetic indels in NGS data, with performance improvements, validation, and benchmarking against other variant callers.

  • UpdatedNov 27, 2024
  • C++

Improve this page

Add a description, image, and links to thegatk4-haplotypecaller topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with thegatk4-haplotypecaller topic, visit your repo's landing page and select "manage topics."

Learn more


[8]ページ先頭

©2009-2025 Movatter.jp