foldseek
Here are 9 public repositories matching this topic...
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
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Jun 13, 2025 - Python
MMseqs2 app to run on your workstation or servers
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Jul 11, 2025 - Vue
A NumPy port of the foldseek code for encoding protein structures to 3di.
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Mar 4, 2025 - Python
Fast indexing and search of discontinuous motifs in protein structures
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Jul 11, 2025 - Rust
Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.
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May 9, 2023 - Python
Analysis workflow for novel gene search based on structural similarity search
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Feb 2, 2025 - Jupyter Notebook
Visualizing 3D fragments of proteins in a scatterplot using Foldseek's 3Di and Transformers.
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Mar 11, 2024 - Jupyter Notebook
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Sep 22, 2024 - Shell
Many-to-many protein search and querying with Foldseek
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Sep 18, 2024 - Jupyter Notebook
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