IsoCor: Isotope Correction for mass spectrometry labeling experiments

• UpdatedFeb 27, 2025
• Python

Estimation of extracellular fluxes and growth rate

• UpdatedAug 29, 2024
• Python

Open source software for parallel labeling, steady state metabolic flux analysis

• UpdatedMay 8, 2018
• Haskell

Kinetic modeling of glucose and acetate metabolisms in E. coli

• UpdatedMar 17, 2021
• Component Pascal

Metabolomics Standards Initiative Ontology

• UpdatedJul 11, 2023
• Java

Integration of isotopic measurements

• UpdatedMar 8, 2021
• Python

Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.

• UpdatedJun 6, 2019
• Jupyter Notebook

Showcase IsoSolve

• UpdatedMar 15, 2021
• HTML

MultiNMRFit: A software to fit 1D and pseudo-2D NMR spectra

• UpdatedJan 6, 2025
• Python

Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry

• UpdatedDec 13, 2019
• Python

Constraint-based metabolic modeling software from the Chandrasekaran Lab

• UpdatedJan 28, 2021
• HTML

IsoDesign is a scientific tool to design 13C-fluxomics experiments.

• UpdatedMar 5, 2025
• Python

Applying implicit deep learning and convex optimization layers to infer metabolic fluxes from gene expression data

• UpdatedJan 26, 2024
• Jupyter Notebook

Flux response of Pseudomonas putida to increased levels of metabolic burden

• UpdatedJul 26, 2023
• R

Constellab brick for genome-scale metabolic modelling

• UpdatedJan 24, 2025
• Python

Supplementary information of Millard et al. 2022

• UpdatedMar 31, 2023
• HTML

Showcase DynafluxR.

• UpdatedFeb 21, 2025
• HTML