A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

• UpdatedSep 5, 2019
• Python

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

• UpdatedMar 28, 2019
• Python

To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

• UpdatedMar 29, 2024
• Python

Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020

• UpdatedFeb 10, 2020
• R

Organization Chart generator using Python and ETE

• UpdatedAug 16, 2023
• Python

Phylogenetic tree construction using ETE toolkit

• UpdatedMay 1, 2018

semestral work at University of West Bohemia, Faculty of Applied Sciences, Department of Computer Science and Engineering

• UpdatedJan 20, 2023
• Python

Docker images for ETE3.

• UpdatedOct 6, 2017
• HTML

The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.

• UpdatedMay 22, 2023
• Python

Script for sorting FASTA sequences by clade in a given tree topology.

• UpdatedJan 14, 2021
• Python

Singularity Recipe for ete3

• UpdatedMar 28, 2018
• Roff

Tree2neo is a command line tool to import Newick tree (nhx) files to neo4j database

• UpdatedOct 20, 2017
• Python