Machine Learning models for in vitro enzyme kinetic parameter prediction

• UpdatedMar 14, 2025
• Python

A Python parser for the BRENDA database

• UpdatedSep 15, 2023
• Python

Python toolkit and package for analyzing enzyme activity data

• UpdatedJun 17, 2022
• Jupyter Notebook

Organize and analyze plate-reader data from 96-well plate kinetics experiments. Specifically tailored for PGO assays but can be modified to fit many more.

• UpdatedSep 5, 2020
• R

LBplot is a python program to plot Lineweaver-Burk double reciprocal plots and calculate basic statistics from V0 and [S] data.

• UpdatedJun 10, 2020
• Python

A Python module for analysis and visualization of dose-response data

• UpdatedAug 15, 2024
• Python

A library for parsing out data from the BRENDA database html files

• UpdatedFeb 4, 2021
• HTML

🔬 mtphandler is Python package for processing, enriching, and converting microtiter plate data into standardized EnzymeML time-course data, ready for data science

• UpdatedFeb 18, 2025
• Python

Enzyme kinetic assays in the Fluidigm Biomark HD instrument

• UpdatedFeb 3, 2021
• HTML

steady-state rate equations for enzyme-catalyzed reactions

• UpdatedFeb 1, 2025
• Python

Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics

• UpdatedOct 30, 2023
• C++

Michaelis-Menten equations in Matlab

• UpdatedSep 24, 2022
• MATLAB

This repository contains the code, data, and analysis scripts for our RNA-Seq gene expression study of adult ruff sandpipers (Calidris pugnax). This study explores morph-specific differences in gene expression and steroid hormone metabolism, focusing on the key enzyme HSD17B2.

• UpdatedFeb 4, 2025
• R

A library for generalized kinetics format

• UpdatedMay 5, 2021
• Modelica

Enzyme Kinetics in R

• UpdatedJan 30, 2024
• R

MSc thesis submitted to University of Hertfordshire

• UpdatedOct 7, 2024
• TeX

Thermodynamics can present itself as kinetic inhibition

• UpdatedMar 16, 2025

Supplementary code of Cox et al., 2019

• UpdatedNov 13, 2018
• Python

Some scripts for biochemical engineering

• UpdatedJan 17, 2022
• MATLAB

📕 - Kinetic modeling workflow

• UpdatedJan 8, 2024
• Jupyter Notebook