Faster, better, smarter ecological niche modeling and species distribution modeling

• UpdatedJan 3, 2023
• R

enm-cli is a unofficial port of some Ericsson ENM web-applications to cli interface written in javascript for nodejs

• UpdatedSep 10, 2024
• JavaScript

Ecological niche modeling and conservation assessment of hickory trees (Carya Nutt.)

• UpdatedOct 10, 2024
• R

Comparing independent, partial pooling, and phylogeny-informed ecological niche models

• UpdatedJan 28, 2019
• TeX

Modeling vulnerability of ruffed lemurs to climate change and deforestation

• UpdatedDec 18, 2022
• R

Thesis for GIST master’s at USC-SSCI. Study compares tuned versus default MaxEnt models at two different covariate resolutions (30m and 800m). Various R packages were used in creating and evaluating the models. ArcGIS Pro used for data preparation and presentation.

• UpdatedFeb 12, 2020
• R

Scripts for species distribution modeling in R using MaxEnt

• UpdatedOct 5, 2017
• R

Data and code for Computational Analysis of Dynamic Allostery and Control in the SARS-CoV-2 Main Protease

• UpdatedJul 22, 2020
• Python

Command Line Interface to API Topology Browser Ericsson ENM

• UpdatedJun 14, 2022
• JavaScript

Models for Middle English provided by CLTK

• UpdatedOct 28, 2023

Scripts for handling of various tasks with Ericsson Network Manager ENM

• UpdatedOct 1, 2021
• Python

Script wfbatch is a wfcli (WinFIOL command line tool) wrapper builtin Ericsson ENM designed to send wfcli commands to several nodes in parallell. Closest to mobatch behavior as possible. Written in bash.

• UpdatedDec 12, 2022
• Shell

This project is a digital version of the so called Relationship Anarchy Smorgasbord. We believe this is a powerful tool and can benefit many more people if there's an easier way to use it.

• UpdatedMar 31, 2024
• TypeScript

Integrative species delimitation in the Myrcia neoobscura complex

• UpdatedOct 1, 2024
• R

Setup, run and analyse Adaptive MDeNM simulations on CHARMM

• UpdatedMar 7, 2025
• Shell

This is a workflow for ecological niche modeling and species distribution modeling for the Marmosini (Didelphimorphia: Didelphidae) of Colombia. It is based on R programming language.

• UpdatedJan 24, 2022
• R

Processed data and scripts for a research article "Optimising Elastic Network Models for Protein Dynamics and Allostery: Spatial and Modal Cut-offs and Backbone Stiffness".

• UpdatedMay 13, 2022
• Jupyter Notebook

Setup and run aMDeNM simulations with Python

• UpdatedMar 19, 2025
• Python