Repository for the GA4GH phenopacket schema

• UpdatedSep 19, 2024
• Java

[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.

• UpdatedFeb 6, 2024
• Python

A software toolkit for the interconversion of standard data models for phenotypic data

• UpdatedMar 19, 2025
• Perl

using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)

• UpdatedJan 13, 2023
• Python

Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"

• UpdatedApr 22, 2020
• MATLAB

The OMOP Common Data Model(v6) implemented in Django (v3)

• UpdatedJan 26, 2021
• Python

How to: create SNOMED CT codelists

• UpdatedNov 13, 2024
• Stata

How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records

• UpdatedJul 20, 2023
• Stata

How to: create drug codelists for recorded prescriptions

• UpdatedSep 30, 2024
• Stata

RETIRED - Clinical phenotyping and ETL system

• UpdatedApr 9, 2018
• Java

This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants

• UpdatedJun 7, 2019
• Jupyter Notebook

Lecture slides on Electronic Health Record Data Quality

• UpdatedDec 18, 2024
• Makefile

Introduction to PERMIT project resources

• UpdatedApr 14, 2018

Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes

• UpdatedFeb 11, 2025
• Jupyter Notebook

Quality and Outcomes Framework (QOF) notes

• UpdatedOct 16, 2024
• R

Repositorio del proyecto "Detección automática de consultas para apoyar la atención de la salud sexual y reproductiva de personas con discapacidad"

• UpdatedDec 18, 2024
• Jupyter Notebook