dropseq

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Hoohm /dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

UpdatedJan 11, 2023
Python

Hoohm /CITE-seq-Count

Star82

A tool that allows to get UMI counts from a single cell protein assay

single-cell 10x dropseq citeseq

UpdatedJul 22, 2024
Python

BIMSBbioinfo /pigx

Star23

Pipelines in genomics

snakemake genomics rnaseq guix dropseq bisulfite-sequencing chipseq

UpdatedApr 7, 2022
HTML

dibbelab /singlecell_bcatlas

Star12

Breast Cancer Single Cell Atlas

dropseq singlecell cell-lines breastcancer gf-icf

UpdatedMar 31, 2022

BIMSBbioinfo /pigx_scrnaseq

Star10

Pipeline for analysis of Dropseq single cell data

guix snakemake-workflows dropseq single-cell-rna-seq

UpdatedNov 14, 2024
Python

ComputationalSystemsBiology /Single-cell-RNA-seq

Star7

Workflows for handling automatic single-cell RNA seq analysis

dropseq smartseq2

UpdatedJul 31, 2018
Java

gambalab /dropseq

Star1

Pipeline to process DROP-seq data

picard dropseq single-cell-rna-seq single-cell-analysis dropseqtools star-algorithm

UpdatedAug 11, 2022
Java

JulianSpagnuolo /adtseq

Star1

adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

scrna-seq 10x 10x-genomics scrnaseq drop-seq dropseq dropseqtools scrna-seq-analysis citeseq cite-seq

UpdatedJun 21, 2019
C++

GwangWooKim /SBC-analysis

Star0

SBC analysis with DIGIST

deseq2 dropseq single-cell-analysis smart-seq2 covariate-adjustment

UpdatedApr 13, 2023
R

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