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dna-structure

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kiharalab /CryoREAD

CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

rna-structure cryo-em dna-structure

UpdatedOct 14, 2024
Python

MooersLab /jupyterlabpymolpysnips

Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.

python snippets jupyter notebook pdb protein-structure jupyter-notebook literate-programming rna-structure jupyterlab grayscale molecular mmcif ligand biomolecular molecular-representation ribbon-diagram dna-structure moleclar-graphics

UpdatedMay 9, 2024
HTML

david-bogdan-r /ARTEMIS

RNA/DNA 3D structure alignment tool

bioinformatics algorithm biology structural-biology structure dna alignment rna-structure rna biological-data-analysis superposition 3d structure-alignment 3d-structure bioinformatics-tool dna-structure rna-3d-structure nucleic-acid dna-3d-structure 3d-structure-alignment

UpdatedDec 3, 2024
Jupyter Notebook

david-bogdan-r /ARTEM

RNA/DNA 3D structure alignment tool

bioinformatics algorithm biology structural-biology structure motif dna rna-structure rna biological-data-analysis superposition 3d 3d-structure bioinformatics-tool motif-search dna-structure rna-3d-structure nucleic-acid structural-motif dna-3d-structure

UpdatedJan 31, 2025
Python

MooersLab /rstudiopymolpysnips

PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.

pdb rstudio protein-structure rmarkdown molecular-graphics pymol literate-programming rna-structure r-programming reticulate molecular-structure molecular-visualization molecular-artwork pymolpysnips dna-structure

UpdatedMay 15, 2024
Vim Snippet

mitoclub /GlobalStructure

replication aging mitochondria mtdna dna-structure

UpdatedJun 21, 2023
Jupyter Notebook

i-l-sokolov /RosettaFoldNA_output_analysis

Analysis of RoseTTAFold2NA and AlphaFold 3 structure predictions to understand whether it can be used to determine the spacing and/or orientation preferences of transcription factors

python protein-structure mdtraj rosettafold dna-structure

UpdatedFeb 10, 2025
Python

Georgakopoulos-Soares-lab /Quadrupia

Analysis of G-Quadruplexes across the tree of life

genomics g-quadruplexes dna-structure

UpdatedFeb 2, 2025
Jupyter Notebook

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