dimensionality-reduction

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lmcinnes /umap

Star8k

Uniform Manifold Approximation and Projection

visualization machine-learning dimensionality-reduction umap topological-data-analysis

UpdatedDec 12, 2025
Python

seandavi /awesome-single-cell

Star3.6k

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

python bioinformatics analysis clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-cycle cell-differentiation gene-expression-profiles analysis-pipeline cell-populations rna-seq-experiments cell-clusters

UpdatedOct 23, 2025

tirthajyoti /Machine-Learning-with-Python

Star3.3k

Practice and tutorial-style notebooks covering wide variety of machine learning techniques

flask data-science machine-learning statistics deep-learning neural-network random-forest clustering numpy naive-bayes scikit-learn regression pandas artificial-intelligence pytest classification dimensionality-reduction matplotlib decision-trees k-nearest-neighbours

UpdatedMay 22, 2023
Jupyter Notebook

benedekrozemberczki /awesome-community-detection

Sponsor

Star2.4k

A curated list of community detection research papers with implementations.

data-science machine-learning deep-learning social-network clustering community-detection network-science deepwalk matrix-factorization networkx dimensionality-reduction factorization network-analysis unsupervised-learning igraph embedding graph-clustering node2vec network-clustering bigclam

UpdatedMar 16, 2024
Python

kk7nc /Text_Classification

Star1.8k

Text Classification Algorithms: A Survey

deep-learning random-forest text-classification recurrent-neural-networks naive-bayes-classifier dimensionality-reduction logistic-regression document-classification convolutional-neural-networks text-processing decision-trees boosting-algorithms support-vector-machines hierarchical-attention-networks nlp-machine-learning conditional-random-fields k-nearest-neighbours deep-belief-network rocchio-algorithm deep-neural-network

UpdatedApr 1, 2025
Python

pavlin-policar /openTSNE

Star1.6k

Extensible, parallel implementations of t-SNE

visualization machine-learning dimensionality-reduction tsne embedding

UpdatedNov 13, 2025
Python

JustGlowing /minisom

Star1.6k

🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps

machine-learning clustering som neural-networks dimensionality-reduction outlier-detection kohonen unsupervised-learning manifold-learning self-organizing-map vector-quantization

UpdatedDec 17, 2025
Python

benedekrozemberczki /datasets

Sponsor

Star648

A repository of pretty cool datasets that I collected for network science and machine learning research.

data-science benchmark machine-learning community-detection network-science deepwalk dataset dimensionality-reduction network-analysis network-embedding link-prediction gcn node2vec graph-embedding node-classification graph2vec node-embedding graph-convolution gnn graph-neural-network

UpdatedMar 16, 2024

cvxgrp /pymde

Star567

Minimum-distortion embedding with PyTorch

visualization machine-learning gpu cuda pytorch dimensionality-reduction embedding graph-embedding feature-vectors

UpdatedJul 1, 2025
Python

maykulkarni /Machine-Learning-Notebooks

Star536

Machine Learning notebooks for refreshing concepts.

python machine-learning natural-language-processing reinforcement-learning deep-learning machine-learning-algorithms neural-networks deep-learning-algorithms dimensionality-reduction python-machine-learning data-processing regression-models deep-learning-tutorial data-science-notebook model-evaluation classification-trees clustering-methods machine-learning-tutorials

UpdatedAug 24, 2021
Jupyter Notebook

KrishnaswamyLab /PHATE

Star530

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

data-visualization dimensionality-reduction unsupervised-learning single-cell manifold-learning

UpdatedNov 14, 2025
Python

PAIR-code /umap-js

Star407

JavaScript implementation of UMAP

javascript dimensionality-reduction umap

UpdatedJul 21, 2025
JavaScript

JuliaStats /MultivariateStats.jl

Star387

A Julia package for multivariate statistics and data analysis (e.g. dimension reduction)

statistics julia linear-regression regression pca dimensionality-reduction cca mds lda ridge-regression ols-regression isotonic-regression multivariate-statistics ica

UpdatedJun 5, 2024
Julia

jlmelville /uwot

Star350

An R package implementing the UMAP dimensionality reduction method.

r dimensionality-reduction umap

UpdatedNov 10, 2025
R

beringresearch /ivis

Star338

Dimensionality reduction in very large datasets using Siamese Networks

machine-learning neural-network data-visualization dimensionality-reduction siamese-neural-network

UpdatedNov 10, 2025
Python

GAA-UAM /scikit-fda

Star337

Functional Data Analysis Python package

visualization python machine-learning statistics curves clustering functions regression python3 registration alignment classification dimensionality-reduction smoothing functional-data-analysis scikits

UpdatedOct 31, 2025
Python

machenslab /dPCA

Star314

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

python matlab dimensionality-reduction

UpdatedDec 5, 2025
Jupyter Notebook

koba-jon /pytorch_cpp

Star306

Deep Learning sample programs using PyTorch in C++

linux deep-learning cpp pytorch dcgan yolo autoencoder vae dimensionality-reduction object-detection convolutional-autoencoder pix2pix semantic-segmentation multiclass-classification anomaly-detection image-to-image-translation u-net libtorch generative-modeling dagmm

UpdatedDec 6, 2025
C++

ardiya /siamesenetwork-tensorflow

Star287

Using siamese network to do dimensionality reduction and similar image retrieval

tensorflow dimensionality-reduction image-retrieval siamese-network

UpdatedJul 22, 2019
Jupyter Notebook

dpeerlab /Palantir

Star283

Single cell trajectory detection

markov-chain dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning single-cell-genomics cell-fate-transitions scrna-seq-analysis

UpdatedNov 23, 2025
Jupyter Notebook

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