ctdna
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R package to work with ctDNA sequencing data
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Feb 20, 2022 - R
A simplified pipeline for ctDNA sequencing data analysis
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Sep 23, 2017 - Shell
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
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Mar 27, 2020 - R
Deduplication for cfDNA sequencing data
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Jul 5, 2017 - Python
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
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Jan 8, 2021 - Python
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
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Jun 6, 2024 - Python
duplex DNA molecule identification tool for ultra-sensitive SNV detection
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Oct 15, 2018 - Python
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
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Nov 8, 2022 - Python
Identification of single nucleotide variants using position-specific error estimation in deep sequencing data
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Apr 21, 2019 - C++
Cancer estimation based on nucleosomes: Analysis of proportion of circulating tumor DNA fragments compared to nucleosome references.
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Dec 2, 2019 - C
Supplementary files for Paracchini, Beltrame et al., Clin Cancer Res, 2020.
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Dec 17, 2020 - Nextflow
Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
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Dec 1, 2024 - Common Workflow Language
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Jan 26, 2023 - Shell
Structural Variants in cell-free tumor DNA
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May 21, 2018
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