Outlier Detection Thresholding

• UpdatedFeb 1, 2025
• Jupyter Notebook

GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.

• UpdatedMar 28, 2025
• R

CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

• UpdatedMar 30, 2025
• Python

A simple pipeline for bacterial assembly and quality control

• UpdatedMar 20, 2025
• Nextflow

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…

• UpdatedMar 28, 2025
• Perl

Python package to calculate various sample contamination metrics.

• UpdatedJul 27, 2024
• Python

Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies

• UpdatedOct 20, 2020
• Shell

Epidemic Modeling Study: This study analyzes with Linear Algebra the progression of disease contagion within a population. Covid-19 Dashboard: We have created an interactive dashboard to analyze the data on the behavior of the Coronavirus in Brazil. The project is powered by a public CSV dataset.

• UpdatedMar 25, 2025
• Python

Generate Coverage, Quality and Contamination metrics for Sequence data.

• UpdatedApr 4, 2023
• Jupyter Notebook

In this repository I backup the pipelines I write for the project I am involved

• UpdatedJan 19, 2025
• Python

luftdaten script for raspberry with enviro+

• UpdatedApr 20, 2020
• Python

Detect and quantify plasmid DNA contamination in sequencing data

• UpdatedJan 20, 2025
• Python