contact-matrix
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A cool place to store your Hi-C
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Mar 17, 2025 - Python
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
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Oct 31, 2024 - Python
A Python implementation for BH-FDR and HiCCUPS
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Nov 7, 2024 - Python
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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Aug 4, 2022 - Python
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
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May 21, 2018 - Jupyter Notebook
A toolkit for analyzing architectural stripes
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Dec 1, 2024 - Python
Data and code accompanying the paper "Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland".
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Sep 16, 2022 - R
Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.
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Mar 18, 2025 - R
A Privacy Enhanced Tool for predicting hotspot areas during pandemic, analyzing consumption trends and estimating contact matrix.
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Jan 10, 2025 - Jupyter Notebook
AutoEncoder to compress contact-map information
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Feb 28, 2019 - Python
On-the-fly processing and visualization of interactome data.
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Jan 7, 2025 - C++
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