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compositional-data

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stefpeschel /NetCoMi

Network construction, analysis, and comparison for microbial compositional data

r r-package network-analysis compositional-data microbiome-data

UpdatedMar 20, 2025
R

meringlab /FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

metadata bioinformatics julia metagenomics high-performance-computing microbiome probabilistic-graphical-models co-occurence compositional-data ecological-network

UpdatedOct 9, 2025
Julia

JuliaEarth /CoDa.jl

Compositional data analysis in Julia

statistics simplex coda compositions compositional-data compositional-data-analysis

UpdatedDec 16, 2025
Julia

boehm-s /fun-php

Functional programming utilities for PHP

functional-programming ramdajs function-composition compositional-data

UpdatedAug 12, 2021
PHP

Vision-CAIR /3DCoMPaT

Official repository for the 3DCoMPaT dataset (ECCV2022 Oral)

computer-vision deep-learning dataset compositional-data

UpdatedApr 19, 2023
Jupyter Notebook

ofgulban /compoda

Simplex space operations for compositional data implemented in Python.

simplex barycentric-coordinates compositional-data compositional-data-analysis simplices n-simplex simplex-space

UpdatedFeb 17, 2022
Python

simhag /Compositional-Pre-Training-for-Semantic-Parsing-with-BERT

Implementation of Semantic Parsing with BERT and compositional pre-training on GeoQuery

natural-language-processing transformer bert semantic-parsing recombination compositional-data

UpdatedMar 20, 2019
Scala

lch14forever /beem-static

📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

compositional-data microbial-ecology microbiome-model

UpdatedAug 24, 2021
R

mcomas /codapack

statistics compositional-data

UpdatedJul 26, 2025
Java

Japal /zCompositions

Imputation of zeros, nondetects and missing data in compositional data sets

missing-data r-package compositional-data censored-data imputation-methods nondetection

UpdatedJul 8, 2025
R

nphdang /DeepCoDA

Deep learning for personalized interpretability for compositional health data

machine-learning medicine deep-learning classification attention-mechanism health-data compositional-data interpretable-deep-learning explainable-ai explainable-ml interpretable-machine-learning

UpdatedApr 18, 2022
Python

mpascariu /CoDa

Forecast mortality using Compositional Data Lee-Carter model - R Package

demography compositional-data mortality-forecasting lee-carter

UpdatedDec 4, 2018
R

nexus

tesselle /nexus

Sourcing Archaeological Materials by Chemical Composition - ❗ This is a read-only mirror fromhttps://codeberg.org/tesselle/nexus

r-package archaeology archaeological-science compositional-data archaeometry provenance-studies

UpdatedSep 5, 2025
R

tystan /simplexity

Hopefully taking out the complexity of using the simplex: functions to generate, manipulate and plot data on the simplex

r simplex plotting compositional-data

UpdatedDec 11, 2024
R

avisionh /analysis-structuralbreak

Practical introduction to modelling and testing for structural breaks in time-series data.

time-series stl compositional-data chow-test structural-break-test

UpdatedDec 8, 2022

seungwoo-stat /20th-PE-forecast

Forecasting the four-party vote share of the 20th presidential election of Republic of Korea

compositional-data presidential-election

UpdatedNov 23, 2023
R

FrederickHuangLin /SECOM-Code-Archive

Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.

correlation sequencing microbiome compositional-data ancom ancom-bc

UpdatedJul 8, 2022
HTML

kkdey /dash

Dirichlet adaptive shrinkage for compositional data

smoothing shrinkage-estimator compositional-statistics compositional-data dirichlet-distribution

UpdatedJan 19, 2018
R

seungwoo-stat /south-korea-election

Presidential election data set from South Korea

compositional-data

UpdatedNov 14, 2022
R

kkdey /dashr

R package for Dirichlet adaptive shrinkage and smoothing

smoothing adaptive-learning shrinkage-estimator compositional-data shrinkage

UpdatedApr 30, 2018
R

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