codon-alignment
Here are 6 public repositories matching this topic...
Genome wide orthology inference and dNdS estimation
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Sep 5, 2025 - R
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
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Jan 22, 2025 - Perl
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
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Mar 18, 2019 - Python
Codon-based alignment for CDS sequences
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Jul 13, 2020 - Perl
Simple code for PS detection, can be used on several files
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Feb 15, 2018 - Shell
It is a powerful tool for aligning nucleotide sequences based on protein alignments, translating nucleotide sequences to protein, and generating phylogenetic trees using Biopython.
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Aug 4, 2024 - Python
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