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biomathematics

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FIPS

humanfactors /FIPS

The Fatigue Impairment Prediction Suite. An R package for running biomathematical models of fatigue.

r simulation modeling rstats human-factors fatigue biomathematics

UpdatedAug 7, 2023
R

SoBioS

americocunhajr /SoBioS

SoBioS is an easy-to-run Matlab code to compute Sobol' indices for biological systems.

bioinformatics computational-biology dynamical-systems nonlinear-dynamics sensitivity-analysis global-sensitivity-analysis ufrj uerj biomathematics sobol-indices

UpdatedJul 18, 2024
MATLAB

willjgh /M4R

Year 4 research project, continuation of summer UROP: Optimization and inference of Markov chains for biochemical reactions.

optimization inference single-cell-genomics biomathematics

UpdatedJun 10, 2024
Jupyter Notebook

willjgh /M5R

Extension of M4R work by application of methods to perturbed datasets

optimization inference single-cell-genomics biomathematics

UpdatedMar 20, 2025
Linear Programming

comp-medicine-uc /alveolar-perfusion-transport-modeling

Microscale lung capillary perfusion and gas exchange modeling.

finite-element-analysis biomedical-engineering continuum-mechanics darcy-flow biomathematics gas-exchange dolfinx pulmonary-function

UpdatedNov 7, 2024
Jupyter Notebook

Projet-de-Bachelor

Benoit-Muller /Projet-de-Bachelor

Bachelor project: "Stability of linear dynamical systems and application to Lotka-Volterra equations and epidemiology"

differential-equations dynamic-systems population-dynamics linear-dynamical-systems biomathematics

UpdatedJan 29, 2023
TeX

MoezGouiaa /Modelling-HIV-Aids-and-fitting-with-data-in-South-africa

This is a project in order to simulate the data of infectious cases in south africa between 2000 and 2023 and to make a model which fits the data to evaluate the effect of treatment and consciousness in infections

data modeling fitting south-africa infectious-diseases aids sir-model biomathematics

UpdatedNov 28, 2024
Jupyter Notebook

ristaniaptr /Model-Matematika-Stres-vs-Imun

Proyek ini memodelkan bagaimana hormon stres memengaruhi sistem imun tubuh manusia.

python stress mathematical-modelling immune-system biomathematics

UpdatedJul 4, 2023
Jupyter Notebook

DrPaulValle /Saccharomyces-cerevisiae-modelling-and-nonlinear-regression-with-normalized-data

Mathematical modeling and fitting by non-linear regression to experimental data in an alcoholic fermentation by the Saccharomyces cerevisiae yeast

biostatistics nonlinear-dynamics mathematical-modelling nonlinear-regression biomathematics saccharomyces-cerevisiae-database

UpdatedSep 2, 2024

Defining-Good-Neighbours /Code

Code Repo - Defining Good Neighbours group project

mathematical-modelling biomathematics nutrient-uptake compound-secretion

UpdatedMar 19, 2021
Python

DelSquared /Predator-Only-Lotka-Volterra-Model

Predator Only Lotka–Volterra Model

python3 rock-paper-scissors differential-equations predator mathematical-biology lotka-volterra-model preys biomathematics

UpdatedJan 6, 2019
Python

poliik /System-Analysis

Practicums from System Analysis

optimal-control stochastic-analysis biomathematics

UpdatedDec 21, 2020
Jupyter Notebook

willjgh /Year-4-Project

thesis biomathematics

UpdatedJan 3, 2025
HTML

DrPaulValle /Modelling-Saccharomyces-cerevisiae-for-the-production-of-fermented-beverages-BEER-2024-

In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.

biostatistics ordinary-differential-equations nonlinear-dynamics mathematical-modelling nonlinear-regression biomathematics saccharomyces-cerevisiae

UpdatedJan 20, 2025
Python

willjgh /UROP

Code written for a UROP project on Markov chain inference in cell biology

optimization markov-chain linear-programming single-cell-genomics stochastic-simulation biomathematics

UpdatedAug 28, 2023

willjgh /interaction-inference

Inference of interaction between genes using constrained optimization

package optimization inference single-cell-genomics stochastic-simulation biomathematics

UpdatedMar 20, 2025
Python

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