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biojava

Here are 9 public repositories matching this topic...

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📖📚An introductory tutorial for BioJava

  • UpdatedFeb 23, 2024
  • Python

BioJava examples in Jupyter Notebooks

  • UpdatedDec 20, 2018
  • Jupyter Notebook

Sequence Similarity and Identity Calculator (DNA + Protein)

  • UpdatedApr 10, 2021
  • Java
BioSilico

Some ideas about Artificial Life, Creatures (game series) and Neural Networks. (Java, Latex, Perl...)

  • UpdatedSep 23, 2024
  • Java
  • UpdatedDec 9, 2017
  • Kotlin

Biojava compatible module to run external biological analysis executables making abstraction of platform specific issues and wrapping to BioJava standard data structures.

  • UpdatedJan 27, 2017
  • Java

Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.

  • UpdatedJan 3, 2019
  • Java

Maven project for the bioinformatic application LoopMatcher (aka LASLO).

  • UpdatedOct 14, 2024
  • Java

Multi-threaded application that searches for hairpin structures in cDNA / mRNA sequences (FASTA or GenBank) with specific consensus sequences in the loop.

  • UpdatedMar 31, 2020
  • Java

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