Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

List of Computer Science courses with video lectures.

• UpdatedDec 14, 2025

Data Apps & Dashboards for Python. No JavaScript Required.

• UpdatedDec 17, 2025
• Python

Official git repository for Biopython (originally converted from CVS)

• UpdatedDec 15, 2025
• Python

A curated list of awesome Bioinformatics libraries and software.

• UpdatedMar 21, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

• UpdatedOct 23, 2025

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

• UpdatedOct 21, 2025
• Python

A DSL for data-driven computational pipelines

• UpdatedDec 17, 2025
• Groovy

Making Protein folding accessible to all!

• UpdatedDec 2, 2025
• Jupyter Notebook

Single-cell analysis in Python. Scales to >100M cells.

• UpdatedDec 16, 2025
• Python

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

• UpdatedNov 23, 2025
• C++

A versatile pairwise aligner for genomic and spliced nucleotide sequences

• UpdatedDec 12, 2025
• C

A set of ready to use scientific skills for Claude

• UpdatedDec 12, 2025
• Python

MMseqs2: ultra fast and sensitive search and clustering suite

• UpdatedDec 5, 2025
• C

A full spaCy pipeline and models for scientific/biomedical documents.

• UpdatedDec 4, 2025
• Python

Official code repository for GATK versions 4 and up

• UpdatedDec 17, 2025
• Java

Conda recipes for the bioconda channel.

• UpdatedDec 17, 2025
• Shell

Data intensive science for everyone.

• UpdatedDec 17, 2025
• Python

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

• UpdatedMar 22, 2025
• C

Toolkit for processing sequences in FASTA/Q formats

• UpdatedJun 1, 2025
• C

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

• UpdatedDec 4, 2025
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