Demultiplexing pipeline for sequencing data

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• Nextflow

for split fastq from mix bcl or fastq data by barcode/index

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• Python

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

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• R

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• Nextflow

a shiny frontend for the nextflow-bcl pipeline

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• R

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• Python

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• Perl

Demultiplexing pipeline for sequencing data

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Workflow for Illumina's bcl2fastq

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• C++

bcl2fastq by Illumina

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• Dockerfile