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analysis-pipeline

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seandavi /awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

python bioinformatics analysis clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-cycle cell-differentiation gene-expression-profiles analysis-pipeline cell-populations rna-seq-experiments cell-clusters

UpdatedFeb 25, 2025

grailbio /reflow

A language and runtime for distributed, incremental data processing in the cloud

language golang aws data-science runtime bioinformatics-pipeline scientific-computing cloud-computing analysis-pipeline

UpdatedOct 18, 2023
Go

tonyfischetti /assertr

Assertive programming for R analysis pipelines

r assertions rstats predicate-functions r-package assertion-library assertion-methods analysis-pipeline peer-reviewed

UpdatedApr 11, 2024
R

cdeldon /thermography

Automatic detection of defected solar panel modules

detection image-processing image-classification analysis-pipeline

UpdatedNov 15, 2017
Python

AllenInstitute /ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

python3 electrophysiology spikes analysis-pipeline

UpdatedAug 18, 2024
Python

PRISM

1313e /PRISM

An alternative to MCMC for rapid analysis of models

python emulator model regression python3 model-analysis analysis-pipeline

UpdatedJun 28, 2021
Python

genepi /cloudgene

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

docker hadoop analysis-pipeline cloudgene cloudgene-saas

UpdatedApr 19, 2024
Java

enormandeau /barque

eDNA metabarcoding pipeline

genomics metabarcoding environmental-dna analysis-pipeline

UpdatedFeb 18, 2025
Python

Mu-Sigma /analysis-pipelines

Enables data scientists to compose pipelines of analysis which consist of data manipulation, exploratory analysis & reporting, as well as modeling steps. Data scientists can use tools of their choice through an R interface, and compose interoperable pipelines between R, Spark, and Python.

python r spark analysis-pipeline interoperable-pipelines

UpdatedNov 23, 2020
R

USDA-VS /vSNP

vSNP -- validate SNPs

bam-files snps pipeline genomics vcf phylogenetics snp wgs high-throughput-sequencing high tuberculosis whole-genome-sequencing analysis-pipeline mycobacterium-tuberculosis-complex brucella freebayes

UpdatedSep 19, 2024
Python

sdss /mangadap

The MaNGA Data Analysis Pipeline

astronomy spectroscopy analysis-pipeline

UpdatedDec 19, 2024
Python

USDA-VS /vSNP3

vSNP -- validate SNPs

bam-files snps pipeline genomics phylogenetics influenza wgs high-throughput-sequencing bwa-mem tuberculosis whole-genome-sequencing analysis-pipeline vcf-files mycobacterium-bovis mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122 brucella freebayes sars-cov-2

UpdatedMar 26, 2025
Python

ahujaraman /spark_kafka_tweet_analysis

What people are tweeting about now, in your desired location? Live Streaming of Twitter Data to Spark and Tweet Analysis application on various trends Eg: Trending HashTags, Trending Mentions etc. Location based features supported.

twitter spark beginner-project pyspark spark-streaming spark-sql analysis-pipeline

UpdatedDec 26, 2018
Python

BlipFinder

mkongsore /BlipFinder

Analysis pipeline capable of searching for dark compact objects in the Milky Way through astrometric lensing in real or mock Gaia DR4 data.

astronomy physics astrophysics gaia high-energy-physics gravitational-lensing telescope particle-physics dark-matter astrometry astroparticle-physics analysis-pipeline milky-way black-holes mock-data-generator neutron-stars dark-matter-halos primordial-black-holes phenomenology

UpdatedJun 20, 2023
Jupyter Notebook

JetBrains-Research /bitcode-tools

Gradle tools to analyze bitcode of a Kotlin/Native project

gradle gradle-plugin bitcode analysis-pipeline kotlin-native gradle-kotlin-dsl kotlin-native-plugin bitcode-generation

UpdatedMar 11, 2024
Kotlin

WormLabCaltech /alaska

Automated and friendly RNA-seq analysis (deprecated)

python docker automation quality-control rna-seq pipeline analysis portal kallisto alaska analysis-pipeline sleuth

UpdatedMay 21, 2019
Python

ynikitenko /lena

Lena is an architectural framework for data analysis

data-science data-analysis analysis-framework analysis-pipeline

UpdatedMar 18, 2025
Python

abhijeetsingh1704 /AcetoScan

AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing

analysis-pipeline amplicon-sequencing fthfs acetogens acetobase

UpdatedAug 27, 2021
Shell

CTLife /PipiDABS

PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.

r dna-methylation analysis-pipeline bs-seq downstream-figures

UpdatedJul 3, 2022
R

weng-lab /krews

KREWS Scientific Data Pipeline Framework

kotlin workflows analysis-pipeline

UpdatedOct 25, 2023
Kotlin

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