An open-source platform for developing protein models beyond AlphaFold.

• UpdatedJun 26, 2024
• Python

Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)

• UpdatedMar 19, 2025
• Jupyter Notebook

Run AlphaFold2 (and multimer) step by step

• UpdatedApr 23, 2022
• Python

RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding

• UpdatedMar 4, 2025

This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.

• UpdatedJul 25, 2023
• Python

A curated list of awesome protein design research, software and resources.

• UpdatedMay 10, 2022

Screen interactions with AlphaFold Multimer

• UpdatedMar 10, 2025
• Python

GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.

• UpdatedAug 7, 2024
• Python

A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster

• UpdatedMay 13, 2022
• HTML

Code repository for the SPOC tool for scoring binary AF-M predicitons.

• UpdatedMar 24, 2025
• Perl

Map AlphaFold PAE values on a model

• UpdatedOct 19, 2024
• Python

fold2go is a nextflow pipeline for in silico prediction of protein structures and interactions through various machine learning models.

• UpdatedMar 21, 2025
• Python

AlphaFold-wrapper for small HPC

• UpdatedNov 15, 2023
• Go

Repo to build AF models of endogeneous ligands

• UpdatedMar 29, 2023
• Shell

AlphaFold pulldown implementation adapted fromhttps://github.com/KosinskiLab/AlphaPulldown

• UpdatedJan 4, 2025
• Jupyter Notebook

RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process

• UpdatedMay 3, 2023

AI based protein modeling and design

• UpdatedNov 13, 2024
• Python